Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-114/megassr/results/hub_GCF_030486305.1/fasta/hub_GCF_030486305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              16
Total size of examined sequences (bp):           4556912
Total number of identified SSRs:                 17
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CA	-	-	-		1	1
TA	-	-	-	1		1
CCG	-	-	1			1
CGG	-	-	1			1
CTG	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1			1
GCT	-	-	1			1
GGC	-	-	2			2
CACGC	1					1
GCGCG	1					1
GCTGG	1					1
GGCGC	1					1
CGCCAG	1					1
GAAGTC	1					1
GCTGGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-		1	1
AT/AT	-	-	-	1		1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	6			6
ACGCC/CGTGG	1					1
AGCCC/CTGGG	1					1
CCGCG/CGCGG	2					2
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	2					2
