Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCF_030435135.1/fasta/hub_GCF_030435135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           4435433
Total number of identified SSRs:                 22
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	8
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CA	-	-	-		1		1
CG	-	-	-	2			2
GC	-	-	-	1			1
CAG	-	-	1				1
CCA	-	-	1				1
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	1				1
CGT	-	-		1			1
GCC	-	-	1				1
GGC	-	-	1				1
AACAC			1				1
GCGCG	2						2
GCGTG	1						1
GGCGC	1						1
CCTGCC		1					1
CGCCAG	1						1
GAAGTC	1						1
GCAGGA						1	1
GCGCCA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-		1		1
CG/CG	-	-	-	3			3
ACC/GGT	-	-	1				1
ACG/CGT	-	-		1			1
AGC/CTG	-	-	1				1
CCG/CGG	-	-	5				5
AACAC/GTGTT			1				1
ACGCC/CGTGG	1						1
CCGCG/CGCGG	3						3
AAGTCG/ACTTCG	1						1
AGCAGG/CCTGCT						1	1
AGCGCC/CGCTGG	2						2
AGGGGC/CCCCTG		1					1
