Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-73/megassr/results/hub_GCF_030374145.1/fasta/hub_GCF_030374145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22
Total size of examined sequences (bp):           4950426
Total number of identified SSRs:                 66
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	22
5	17
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	5			5
GC	-	-	-	6	1	2	9
CAG	-	-	2				2
CGC	-	-	3				3
CGG	-	-	7				7
CTG	-	-	2				2
GCA	-	-	1				1
GCC	-	-	2				2
GCG	-	-	3				3
GGC	-	-	1				1
TGC	-	-	1				1
AAAAT	1						1
AAACA	1						1
CCCGC	2						2
CGCAG	1						1
CGCCG	2						2
GCCGC	1						1
GCGCC	2						2
GCGCG	1						1
GCGGC	1						1
GGCCG	1						1
GGCGC	3						3
TAATT					1		1
AAAACC	1						1
AAGATG	1						1
CAACAG	1						1
CAGGCG	1						1
CGCCAG	1						1
CGCCTG	1						1
CGCTGA	1						1
CGGCGA	1						1
GCGCCA	1						1
GCGGTG	1						1
GCTGGC	1						1
TCAGCG	1						1
TGCCGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	11	1	2	14
AGC/CTG	-	-	6				6
CCG/CGG	-	-	16				16
AAAAC/GTTTT	1						1
AAAAT/ATTTT	1						1
AAATT/AATTT					1		1
AGCGC/CGCTG	1						1
CCCCG/CGGGG	2						2
CCCGG/CCGGG	1						1
CCGCG/CGCGG	10						10
AAAACC/GGTTTT	1						1
AACAGC/CTGTTG	1						1
AAGATG/ATCTTC	1						1
ACCGCC/CGGTGG	1						1
ACCGGC/CCGGTG	1						1
ACGCTG/AGCGTC	2						2
ACGGCG/CCGTCG	1						1
AGCGCC/CGCTGG	3						3
AGGCGC/CCTGCG	2						2
