Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_030016165.2/fasta/hub_GCF_030016165.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6752883
Total number of identified SSRs:                 48
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
4	1
5	14
6	32

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	1								1
GCCA	-		1									1
CCAGG	1											1
CCGGT	1											1
CGGCG	1											1
CTTCC		1										1
GCCCA			1									1
GCCCC	1											1
GCCGC	1											1
GCCTT	1											1
GCGCA	1											1
GCGCG	1											1
GCGGC	1											1
GCGTG	1											1
GGCTC	1											1
TGCGC	1											1
AAAGCC	1											1
AAGCCA					1							1
CACCAG	1											1
CACCTG	1											1
CAGGAG											1	1
CAGGCC	1											1
CAGTAC	1											1
CCAGCG	1											1
CCAGGC	1											1
CCGGCC	1											1
CCTGGC	1											1
CGCCAC	1											1
CGTGAT	1											1
CTGGGC	2											2
CTGTTC	1											1
CTTGGC	1											1
GAAGGG	1											1
GACCTG	1											1
GCAAAG	1											1
GCCCAA	1											1
GCCTGA	1											1
GCTCCA			1									1
GCTTGA	1											1
GCTTTG	1											1
GGCCCA	1											1
GGGCAA	1											1
GGGCCA	2											2
GGGCCT	1											1
GTGATC						1						1
TGCCAG						1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	1								1
AGCC/CTGG	-		1									1
AAGGC/CCTTG	1											1
AAGGG/CCCTT		1										1
ACCGG/CCGGT	1											1
ACGCC/CGTGG	1											1
AGCCC/CTGGG			1									1
AGCCG/CGGCT	1											1
AGCGC/CGCTG	2											2
AGGCC/CCTGG	1											1
CCCCG/CGGGG	1											1
CCGCG/CGCGG	4											4
AAAGCC/CTTTGG	2				1							3
AAAGGC/CCTTTG	1											1
AACAGG/CCTGTT	1											1
AAGCCC/CTTGGG	1											1
AAGCTC/AGCTTG	1											1
AAGGCC/CCTTGG	1											1
AAGGGC/CCCTTG	1											1
AAGGGG/CCCCTT	1											1
ACCAGC/CTGGTG	1											1
ACCAGT/ACTGGT	1											1
ACCGCC/CGGTGG	1											1
ACCTGC/AGGTGC	1											1
ACCTGG/AGGTCC	1											1
ACGATC/ATCGTG	1					1						2
ACTGGC/AGTGCC						1						1
AGCAGG/CCTGCT											1	1
AGCCTG/AGGCTC	1											1
AGCGCC/CGCTGG	1											1
AGCTCC/AGCTGG			1									1
AGGCCC/CCTGGG	6											6
AGGGCC/CCCTGG	3											3
CCCCGG/CCGGGG	1											1
