Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-107/megassr/results/hub_GCF_030014005.1/fasta/hub_GCF_030014005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2601358
Total number of identified SSRs:                 11
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
TG	-	-	-	1	1
TAT	-	-	1		1
AATAC	1				1
AATTA	1				1
ATTAT	1				1
GTTCT	1				1
ATAAAG	1				1
TATAGC	1				1
TTCTTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AT/AT	-	-	-	2	2
AAT/ATT	-	-	1		1
AAATT/AATTT	1				1
AACAG/CTGTT	1				1
AATAC/ATTGT	1				1
AATAT/ATATT	1				1
AAAAAG/CTTTTT	1				1
AAAGAT/ATCTTT	1				1
AGCTAT/AGCTAT	1				1
