Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_030012845.1/fasta/hub_GCF_030012845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           2640687
Total number of identified SSRs:                 21
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	3
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2	1	3
GT	-	-	-		1	1
TA	-	-	-	2	1	3
AAT	-	-			1	1
TAA	-	-	1	1		2
AAAAG	1					1
AATTA	1					1
AGAAT	1					1
ATTAT	1					1
GTATT	1					1
TAAAT	1					1
AATGAT	1					1
GTATGT	1					1
TAATGA		1				1
TATAGC	1					1
TTCTTT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-		1	1
AT/AT	-	-	-	4	2	6
AAT/ATT	-	-	1	1	1	3
AAAAG/CTTTT	1					1
AAATT/AATTT	2					2
AATAC/ATTGT	1					1
AATAG/ATTCT	1					1
AATAT/ATATT	1					1
AAAAAG/CTTTTT	1					1
AATGAT/ATCATT	1	1				2
ACACAT/ATGTGT	1					1
AGCTAT/AGCTAT	1					1
