Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_029871555.1/fasta/hub_GCF_029871555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              383
Total size of examined sequences (bp):           3177587
Total number of identified SSRs:                 6
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
5	2
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
GCT	-	-	1	1
TCA	-	-	1	1
ATAAA	1			1
TCAGT	1			1
TTTGGG	1			1
TTTTTC	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AGC/CTG	-	-	1	1
ATC/ATG	-	-	1	1
AAAAT/ATTTT	1			1
AACTG/AGTTC	1			1
AAAAAG/CTTTTT	1			1
AAACCC/GGGTTT	1			1
