Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_029871405.1/fasta/hub_GCF_029871405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              80
Total size of examined sequences (bp):           2975891
Total number of identified SSRs:                 11
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	4
5	5
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GT	-	-	-								1	1
AGC	-	-	1									1
ATG	-	-	1									1
CTT	-	-	1									1
GCA	-	-					1					1
ACTGA	1											1
ATAAA	1											1
CATTT	1											1
GTTTG	1											1
TTTAT	1											1
TTTTTC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-								1	1
AAG/CTT	-	-	1									1
AGC/CTG	-	-	1				1					2
ATC/ATG	-	-	1									1
AAAAT/ATTTT	2											2
AAACC/GGTTT	1											1
AAATG/ATTTC	1											1
AACTG/AGTTC	1											1
AAAAAG/CTTTTT	1											1
