Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_029871395.1/fasta/hub_GCF_029871395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              57
Total size of examined sequences (bp):           3015821
Total number of identified SSRs:                 7
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
5	2
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
ATG	-	-	1		1
TGT	-	-		1	1
GTTTG	1				1
TTTAT	1				1
CAAAAC		1			1
CAACAG	1				1
GAAAAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAC/GTT	-	-		1	1
ATC/ATG	-	-	1		1
AAAAT/ATTTT	1				1
AAACC/GGTTT	1				1
AAAAAG/CTTTTT	1				1
AAAACC/GGTTTT		1			1
AACAGC/CTGTTG	1				1
