Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_029871355.1/fasta/hub_GCF_029871355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              180
Total size of examined sequences (bp):           3064841
Total number of identified SSRs:                 9
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
GT	-	-	-														1	1
AGC	-	-	1															1
ATG	-	-	1															1
CTG	-	-			1													1
ACTGA	1																	1
GTTTG	1																	1
TTTAT	1																	1
AAAACC	1																	1
AAAATA	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AC/GT	-	-	-														1	1
AGC/CTG	-	-	1		1													2
ATC/ATG	-	-	1															1
AAAAT/ATTTT	1																	1
AAACC/GGTTT	1																	1
AACTG/AGTTC	1																	1
AAAAAT/ATTTTT	1																	1
AAAACC/GGTTTT	1																	1
