Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_029871335.1/fasta/hub_GCF_029871335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91
Total size of examined sequences (bp):           2889999
Total number of identified SSRs:                 13
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
5	6
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CA	-	-	-													1	1
GT	-	-	-											1			1
ATG	-	-	1														1
CAA	-	-		1													1
GCA	-	-						1									1
GCT	-	-		1													1
ACATA	1																1
ACTGA	1																1
GTTTG	1																1
TGTCT	1																1
TTTAT	1																1
TTTTA	1																1
GAAAAA	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AC/GT	-	-	-											1		1	2
AAC/GTT	-	-		1													1
AGC/CTG	-	-		1				1									2
ATC/ATG	-	-	1														1
AAAAT/ATTTT	2																2
AAACC/GGTTT	1																1
AACAT/ATGTT	1																1
AACTG/AGTTC	1																1
AAGAC/CTTGT	1																1
AAAAAG/CTTTTT	1																1
