Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_029783395.1/fasta/hub_GCF_029783395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1017286
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	1
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
TA	-	-	-	2			1				1	1	5
AAT	-	-		1									1
ATAAT	1												1
ATATT	1												1
CAAAA	1												1
CTTTT	1												1
TTATT	1												1
TTGTT	1												1
TTTTA	1												1
AGAAAA	1												1
ATCAAT	1												1
GAAAAA	1												1
TTTAAG	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	2			1				1	1	5
AAT/ATT	-	-		1									1
AAAAC/GTTTT	2												2
AAAAG/CTTTT	1												1
AAAAT/ATTTT	2												2
AATAT/ATATT	2												2
AAAAAG/CTTTTT	2												2
AAACTT/AAGTTT	1												1
AATATC/ATATTG	1												1
