Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-75/megassr/results/hub_GCF_029478665.1/fasta/hub_GCF_029478665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              136
Total size of examined sequences (bp):           5838355
Total number of identified SSRs:                 54
Number of SSR containing sequences:              39
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
5	8
6	37

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
GC	-	-	-	1											1
GT	-	-	-			1									1
CAC	-	-	2												2
CTG	-	-	1												1
GCC	-	-	2												2
GCT	-	-	1												1
GGC	-	-	1												1
CCACG	1														1
CGCGC	1														1
GCCAG	1														1
GCCGC	1														1
GCGAT	1														1
GCGGC	1														1
GGCGC	1														1
TGGCC	1														1
AGAGGA		1													1
AGCCGA					1										1
AGCCGG			1												1
AGGCGA	1														1
AGTCAA			1												1
AGTGGC	1														1
CACCCT	1														1
CAGGAA	1														1
CAGGCC	2														2
CCAAAG		1													1
CCAGGC	1														1
CCAGGG	1														1
CCCTGG	1														1
CCGGGG	1														1
CCTGCT	1														1
CCTGGC	1														1
CGATGA	1														1
CGCCGA	1														1
CGGAGC		1													1
GACCAT	1														1
GAGCCC	1														1
GAGCTG	1														1
GCCAAA								1						1	2
GCCTGC	1														1
GCTGCC	1														1
GGCCAT	1														1
GGCCTG	1														1
GGCTTC	1														1
GGTGCC	1														1
GTCAGC	1														1
TCAAGG	1														1
TCGGCT					1										1
TCTTGA								1							1
TCTTGC	1														1
TTGCCC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-			1									1
CG/CG	-	-	-	1											1
ACC/GGT	-	-	2												2
AGC/CTG	-	-	2												2
CCG/CGG	-	-	3												3
ACGCC/CGTGG	1														1
AGGCC/CCTGG	2														2
ATCGC/ATGCG	1														1
CCGCG/CGCGG	4														4
AAAGCC/CTTTGG		1						1						1	3
AAAGTC/ACTTTG			1												1
AACAGG/CCTGTT	1														1
AAGAGC/CTCTTG	1														1
AAGAGG/CCTCTT		1													1
AAGATC/ATCTTG								1							1
AAGCCG/CGGCTT	1				2										3
AAGGCG/CCTTCG	1														1
AAGGGC/CCCTTG	1														1
AAGGTC/ACCTTG	1														1
ACCATG/ATGGTC	1														1
ACCCTC/AGGGTG	1														1
ACCGGC/CCGGTG	1														1
ACGATG/ATCGTC	1														1
ACGCCG/CGGCGT	1														1
ACGCTG/AGCGTC	1														1
ACTGCC/AGTGGC	1														1
AGCAGG/CCTGCT	1														1
AGCCCG/CGGGCT	1														1
AGCCGG/CCGGCT		1	1												2
AGCGGC/CCGCTG	1														1
AGCTCC/AGCTGG	1														1
AGGCCC/CCTGGG	4														4
AGGCGC/CCTGCG	1														1
AGGGCC/CCCTGG	3														3
ATGGCC/ATGGCC	1														1
CCCCGG/CCGGGG	1														1
