Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_029351005.1/fasta/hub_GCF_029351005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              125
Total size of examined sequences (bp):           4955531
Total number of identified SSRs:                 28
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	6
3	6
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1																																																			1	3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1								1																																																2
CG	-	-	-	2		1																																																																				3
GC	-	-	-	2																																																																						2
TA	-	-	-	1																																																																						1
CCG	-	-	2																																																																							2
CGC	-	-	1																																																																							1
CGG	-	-	1																																																																							1
GCG	-	-	1																																																																							1
GCT	-	-	1																																																																							1
TGGC	-	1																																																																								1
AGTTG	1																																																																									1
CCACG	1																																																																									1
CGCGC	1																																																																									1
GCGCC	1																																																																									1
TCCCT	1																																																																									1
CACGAC				1																																																																						1
CGCCAG	1																																																																									1
GAAGTC	1																																																																									1
GCCAGC	1																																																																									1
TAAAAA	1																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1			1				1																																															1	5
AT/AT	-	-	-	1																																																																						1
CG/CG	-	-	-	4		1																																																																				5
AGC/CTG	-	-	1																																																																							1
CCG/CGG	-	-	5																																																																							5
AGCC/CTGG	-	1																																																																								1
AACTC/AGTTG	1																																																																									1
AAGGG/CCCTT	1																																																																									1
ACGCC/CGTGG	1																																																																									1
CCGCG/CGCGG	2																																																																									2
AAAAAT/ATTTTT	1																																																																									1
AAGTCG/ACTTCG	1																																																																									1
ACCACG/CGTGGT				1																																																																						1
AGCGCC/CGCTGG	2																																																																									2
