Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-113/megassr/results/hub_GCF_029002115.1/fasta/hub_GCF_029002115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              66
Total size of examined sequences (bp):           6018396
Total number of identified SSRs:                 51
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	9
3	22
5	5
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
CG	-	-	-	5	1																6
CT	-	-	-	1																	1
GC	-	-	-	2																	2
ACC	-	-	1																		1
AGC	-	-		1																	1
CAG	-	-	4																		4
CCG	-	-	2																		2
CGC	-	-	2																		2
CGG	-	-	3																		3
CTG	-	-	1																		1
GCA	-	-	1																		1
GCG	-	-	2	1																	3
GGC	-	-	1																		1
GTC	-	-	1																		1
GTG	-	-	1																		1
TGG	-	-		1																	1
ACGCC	1																				1
AGCGC	1																				1
GCTGC	1																				1
GGCGC	1																				1
TGGAT	1																				1
AACATG	1																				1
AGAGGA	1																				1
CAGCGC	1																				1
CGACTT	1																				1
CGCAGG	1																				1
GCAGGA											1										1
GCGCTG	1																				1
GCTGCA	1																				1
GCTGGC	1																				1
TAGTTG								1													1
TGCTGG	1																				1
TGGCTT	1																				1
TTCAAC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2	2
AG/CT	-	-	-	1																	1
CG/CG	-	-	-	7	1																8
ACC/GGT	-	-	2	1																	3
ACG/CGT	-	-	1																		1
AGC/CTG	-	-	6	1																	7
CCG/CGG	-	-	10	1																	11
AATCC/ATTGG	1																				1
ACGCC/CGTGG	1																				1
AGCGC/CGCTG	2																				2
CCGCG/CGCGG	1																				1
AAAGCC/CTTTGG	1																				1
AACATG/ATGTTC	1																				1
AACTAC/AGTTGT								1													1
AACTTC/AAGTTG	1																				1
AAGAGG/CCTCTT	1																				1
AAGTCG/ACTTCG	1																				1
ACCAGC/CTGGTG	1																				1
AGCAGG/CCTGCT											1										1
AGCGCC/CGCTGG	3																				3
AGCTGC/AGCTGC	1																				1
AGGCGC/CCTGCG	1																				1
