Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCF_029002075.1/fasta/hub_GCF_029002075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           5943594
Total number of identified SSRs:                 57
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	24
4	1
5	8
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	3	2								5
GC	-	-	-	4									4
ACC	-	-	1										1
AGC	-	-	1										1
CAC	-	-			1								1
CCG	-	-	4										4
CGA	-	-	1										1
CGC	-	-		1									1
CGG	-	-	3										3
CTG	-	-	5										5
GCC	-	-	1										1
GCG	-	-	4	1									5
GGC	-	-	1										1
AGCC	-	1											1
AAAAC	1												1
AGCGC	1												1
CGCGC	1												1
GCAGC	1												1
GCCGC	1												1
GGCGC	1												1
GGCGT	1												1
GGTCT	1												1
AAGGGT												1	1
ACATGA		1											1
CAGCGC	1												1
CCAGCA	1												1
CCATGA			1										1
CGACTT	1												1
GAGTCG	1												1
GCGCCA	1												1
GCGCTG	1												1
GCTGGC	1												1
GGCGCT	2												2
GTCGGA				1									1
GTTGAA	1												1
GTTGTG		1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	7	2								9
ACC/GGT	-	-	1		1								2
ACG/CGT	-	-	1										1
AGC/CTG	-	-	6										6
CCG/CGG	-	-	13	2									15
AGCC/CTGG	-	1											1
AAAAC/GTTTT	1												1
ACCAG/CTGGT	1												1
ACGCC/CGTGG	1												1
AGCGC/CGCTG	2												2
CCGCG/CGCGG	3												3
AACATG/ATGTTC		1											1
AACCAC/GGTTGT		1											1
AACTTC/AAGTTG	1												1
AAGGGT/ACCCTT												1	1
AAGTCG/ACTTCG	1												1
ACCAGC/CTGGTG	1												1
ACCATG/ATGGTC			1										1
ACTCCG/AGTCGG	1			1									2
AGCGCC/CGCTGG	6												6
