Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_029002015.1/fasta/hub_GCF_029002015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           4617510
Total number of identified SSRs:                 27
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	5
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	2	2
GC	-	-	-	5	5
CAG	-	-	1		1
CCG	-	-	2		2
CTG	-	-	1		1
GTG	-	-	1		1
AAAAT	1				1
CCATT			1		1
CGCGC	1				1
CGTCG	1				1
ATCTTC	1				1
ATGACA	1				1
CATTGC			1		1
CCATCG	1				1
CGACTT	1				1
CGCTGG	1				1
GCTGGC	1				1
GGAGAA	1				1
GGGGTC		1			1
TGGTCA		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	7	7
ACC/GGT	-	-	1		1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	2		2
AAAAT/ATTTT	1				1
AATGG/ATTCC			1		1
ACGCG/CGCGT	1				1
CCGCG/CGCGG	1				1
AAGATG/ATCTTC	1				1
AAGGAG/CCTTCT	1				1
AAGTCG/ACTTCG	1				1
AATGAC/ATTGTC	1				1
AATGGC/ATTGCC			1		1
ACCATG/ATGGTC		1			1
ACCCCG/CGGGGT		1			1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
