Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCF_029001955.1/fasta/hub_GCF_029001955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           5506750
Total number of identified SSRs:                 34
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	11
4	1
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
CT	-	-	-	1		1
GC	-	-	-	3		3
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	1			1
CGC	-	-	1			1
CGG	-	-	1			1
CTG	-	-	1			1
GCC	-	-	1			1
GCG	-	-		1		1
GCT	-	-	1			1
TCG	-	-	1			1
CTGG	-	1				1
AGCAC	1					1
CCGGG	1					1
CGCCG	1					1
CGCGG	1					1
GCCGG	1					1
GCGCC	1					1
GGAAG	1					1
CACCAG	1					1
CCGGAG		1				1
CGCCTG	1					1
CGCTGA	1					1
CGGTAT	1					1
GAAGTC	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	6	1	7
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	4			4
CCG/CGG	-	-	4	1		5
AGCC/CTGG	-	1				1
AAGGG/CCCTT	1					1
ACAGC/CTGTG	1					1
CCCGG/CCGGG	2					2
CCGCG/CGCGG	3					3
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACGCTG/AGCGTC	1					1
AGCCGG/CCGGCT		1				1
AGGCGC/CCTGCG	1					1
