Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-72/megassr/results/hub_GCF_028898685.1/fasta/hub_GCF_028898685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           6052288
Total number of identified SSRs:                 20
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
GT	-	-	-	1																																																1
TA	-	-	-	1																																																1
ATG	-	-	1																																																	1
GCG	-	-				1																																														1
TGC	-	-	1																																																	1
ATTG	-		1																																																	1
GAATG	1																																																			1
GCTTG	1																																																			1
GCTTT			1																																																	1
TAATT	1																																																			1
AAATGA		1																																																		1
AACAGC																																																			1	1
CAGATT						1																																														1
CTCTCA		1																																																		1
CTTCTG							1																																													1
GAAGTA		1																																																		1
GATGGT			1																																																	1
TCGTGC	1																																																			1
TGGCTC																				1																																1
TGTTTA		1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
AC/GT	-	-	-	1																																																1
AT/AT	-	-	-	1																																																1
AGC/CTG	-	-	1																																																	1
ATC/ATG	-	-	1																																																	1
CCG/CGG	-	-				1																																														1
AATC/ATTG	-		1																																																	1
AAAGC/CTTTG			1																																																	1
AAATT/AATTT	1																																																			1
AAGCC/CTTGG	1																																																			1
AATGG/ATTCC	1																																																			1
AAAATG/ATTTTC		1																																																		1
AAACAT/ATGTTT		1																																																		1
AACAGC/CTGTTG																																																			1	1
AAGCAG/CTGCTT							1																																													1
AAGTAG/ACTTCT		1																																																		1
AATCTG/AGATTC						1																																														1
ACCATC/ATGGTG			1																																																	1
ACGAGC/CGTGCT	1																																																			1
ACTCTC/AGAGTG		1																																																		1
AGAGCC/CTCTGG																				1																																1
