Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_028802775.1/fasta/hub_GCF_028802775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              30
Total size of examined sequences (bp):           5734063
Total number of identified SSRs:                 46
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
5	6
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1	1									2
GC	-	-	-	3										3
ACC	-	-	1											1
CAG	-	-	2											2
CCG	-	-	2											2
CGG	-	-	2											2
CTG	-	-	3											3
GCA	-	-	1											1
GCC	-	-	1											1
GCG	-	-	3	1										4
GGC	-	-	1											1
GGT	-	-	1											1
CACTG	1													1
CCAGC	1													1
CGCCG	2													2
GAAGT					1									1
GCGAG	1													1
AACTAC				1										1
ATCTGA						1								1
ATGCCA		1												1
CCAGCA	1													1
CGACTC	1													1
CGACTT	1													1
CGATTC	1													1
GCAGTC	1													1
GCCGTT	1													1
GCGCTG	1													1
GCGGCA	1													1
GCTCCG	1													1
GCTGGC	2													2
GGCGCT	1													1
GTATCG	1													1
TGGCAG													1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	4	1									5
ACC/GGT	-	-	2											2
AGC/CTG	-	-	6											6
CCG/CGG	-	-	9	1										10
AAGTG/ACTTC					1									1
ACTGC/AGTGC	1													1
AGCCC/CTGGG	1													1
AGGCG/CCTCG	1													1
CCGCG/CGCGG	2													2
AACGGC/CCGTTG	1													1
AACTAC/AGTTGT				1										1
AAGTCG/ACTTCG	1													1
AATCGG/ATTCCG	1													1
AATCTG/AGATTC						1								1
AATGCC/ATTGGC		1												1
ACCAGC/CTGGTG	1													1
ACCGAT/ATCGGT	1													1
ACTCCG/AGTCGG	1													1
ACTGCC/AGTGGC													1	1
ACTGCG/AGTCGC	1													1
AGCCGG/CCGGCT	1													1
AGCGCC/CGCTGG	4													4
AGCGGC/CCGCTG	1													1
