Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCF_028802595.1/fasta/hub_GCF_028802595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              99
Total size of examined sequences (bp):           6079302
Total number of identified SSRs:                 41
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	17
4	2
5	6
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3	1				4
ACC	-	-	1						1
AGC	-	-	1						1
CAG	-	-	1						1
CCG	-	-	2						2
CGC	-	-	1						1
CGG	-	-	3						3
CTG	-	-	2						2
GCC	-	-	1						1
GCG	-	-	1	1					2
GCT	-	-	1	1					2
TGC	-	-	1						1
GGCT	-	1							1
TGGC	-	1							1
AATAA	1								1
AATTA	1								1
AGCGC	1								1
CCGCG	1								1
CGCCG	1								1
GAGCG	1								1
AAATAT	1								1
AAGCCA	1								1
AGGCAG				1					1
CAGAGG								1	1
CAGCGC	1								1
CATCAG	1								1
CATGAA			1						1
CGACTT	1								1
CGATAC	1								1
CTGACC			1						1
GAACAC		1							1
GGAGCC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	3	1				4
ACC/GGT	-	-	1						1
AGC/CTG	-	-	6	1					7
CCG/CGG	-	-	8	1					9
AGCC/CTGG	-	2							2
AAAAT/ATTTT	1								1
AAATT/AATTT	1								1
AGCGC/CGCTG	1								1
AGCGG/CCGCT	1								1
CCGCG/CGCGG	2								2
AAAGCC/CTTTGG	1								1
AAATAT/ATATTT	1								1
AACACG/CGTGTT		1							1
AACATG/ATGTTC			1						1
AAGTCG/ACTTCG	1								1
ACCCTG/AGGGTC			1						1
ACCGAT/ATCGGT	1								1
AGAGGC/CCTCTG				1				1	2
AGCATC/ATGCTG	1								1
AGCCGG/CCGGCT	1								1
AGCGCC/CGCTGG	1								1
