Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_028802335.1/fasta/hub_GCF_028802335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              66
Total size of examined sequences (bp):           5761980
Total number of identified SSRs:                 37
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	12
4	1
5	7
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	1	1
CAG	-	-	1		1
CCG	-	-	2		2
CGC	-	-	1		1
CGG	-	-	2		2
CTG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1	1	2
GCT	-	-		1	1
GGT	-	-	1		1
TGGC	-	1			1
AATTA	1				1
AGCGC	1				1
CGCTC	1				1
CGGCG	1				1
GCGCG	1				1
GCGCT	1				1
GCTGG	1				1
ACCAGC	1				1
ACCGCC		1			1
AGCGTC			1		1
ATGTTC			1		1
CAGCGC	2				2
CGACTC	1				1
CGATAC	1				1
CGGAGC	1				1
GAAGTC	1				1
GCCAGC	1				1
TCCGAC		1			1
TGTTCG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	4	4
ACC/GGT	-	-	1		1
AGC/CTG	-	-	2	1	3
CCG/CGG	-	-	7	1	8
AGCC/CTGG	-	1			1
AAATT/AATTT	1				1
AGCCC/CTGGG	1				1
AGCGC/CGCTG	2				2
AGCGG/CCGCT	1				1
CCGCG/CGCGG	2				2
AACACG/CGTGTT	1				1
AACATG/ATGTTC			1		1
AAGTCG/ACTTCG	1				1
ACCAGC/CTGGTG	1				1
ACCGAT/ATCGGT	1				1
ACCGCC/CGGTGG		1			1
ACGCTG/AGCGTC			1		1
ACTCCG/AGTCGG	1	1			2
AGCCGG/CCGGCT	1				1
AGCGCC/CGCTGG	3				3
