Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-97/megassr/results/hub_GCF_028801985.1/fasta/hub_GCF_028801985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           5944886
Total number of identified SSRs:                 57
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	24
4	1
5	8
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	3	2									5
GC	-	-	-	4										4
ACC	-	-	1											1
CAG	-	-	2											2
CCG	-	-	4											4
CGC	-	-	2											2
CGG	-	-	2											2
CTG	-	-	3											3
GCC	-	-	2											2
GCG	-	-	1	2										3
GCT	-	-	1											1
GGC	-	-	2											2
GTC	-	-	1											1
GTG	-	-			1									1
GGCT	-	1												1
CGCGG	1													1
CGGCG	1													1
GCGCT	1													1
GCTGC	1													1
GGCGC	1													1
GGCGT	1													1
GGTCT	1													1
TTTGT	1													1
ACATGA		1												1
CAACCA		1												1
CAGCGC	1													1
CCATGA			1											1
CGACTT	1													1
GCCAGC	1													1
GCGCCA	1													1
GCGCTG	1													1
GGCGCT	1													1
TACCCT													1	1
TCCGAC	1			1										2
TGCTGG	1													1
TGGCGC	1													1
TTCAAC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	7	2									9
ACC/GGT	-	-	1		1									2
ACG/CGT	-	-	1											1
AGC/CTG	-	-	6											6
CCG/CGG	-	-	13	2										15
AGCC/CTGG	-	1												1
AAAAC/GTTTT	1													1
ACCAG/CTGGT	1													1
ACGCC/CGTGG	1													1
AGCGC/CGCTG	2													2
CCGCG/CGCGG	3													3
AACATG/ATGTTC		1												1
AACCAC/GGTTGT		1												1
AACTTC/AAGTTG	1													1
AAGGGT/ACCCTT													1	1
AAGTCG/ACTTCG	1													1
ACCAGC/CTGGTG	1													1
ACCATG/ATGGTC			1											1
ACTCCG/AGTCGG	1			1										2
AGCGCC/CGCTGG	6													6
