Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCF_028801595.1/fasta/hub_GCF_028801595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           5409551
Total number of identified SSRs:                 57
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	24
5	8
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AG	-	-	-	1		1
CG	-	-	-	2	2	4
GA	-	-	-	1		1
GC	-	-	-	4		4
AGG	-	-	1			1
CAC	-	-	1			1
CCG	-	-	2			2
CGA	-	-	1			1
CGC	-	-	1	1		2
CGG	-	-	3			3
CTG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-	2	1		3
GCT	-	-	1			1
GGC	-	-	4			4
TCA	-	-	1			1
TCG	-	-	1			1
TGC	-	-	1			1
AGGGG	1					1
CCACG	1					1
CCGCG	1					1
CGCCG	1					1
GCGCG	2					2
GGCGC	1					1
TCCCC	1					1
ATCGCC	1					1
CAGCGC	1					1
CGACTT	1					1
CTGCGC	1					1
CTGGTG	1					1
GACCAT				1		1
GAGCTG	1					1
GCAGCT	1					1
GCCTGG	1					1
GCTCCG		1				1
GGGCGT	1					1
GTGGAA	1					1
TCACCC	1					1
TCAGGG	1					1
TCTTCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	2		2
CG/CG	-	-	-	6	2	8
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4			4
AGG/CCT	-	-	1			1
ATC/ATG	-	-	1			1
CCG/CGG	-	-	13	2		15
ACGCC/CGTGG	1					1
AGGGG/CCCCT	2					2
CCGCG/CGCGG	5					5
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCATG/ATGGTC				1		1
ACCCTC/AGGGTG	1					1
ACCCTG/AGGGTC	1					1
ACGCCC/CGTGGG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGCTCC/AGCTGG	1					1
AGCTGC/AGCTGC	1					1
AGGCCC/CCTGGG	1					1
AGGCGC/CCTGCG	1					1
ATCGCC/ATGGCG	1					1
