Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_028439445.1/fasta/hub_GCF_028439445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           985556
Total number of identified SSRs:                 44
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	26
4	3
5	1
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																		1	1
AT	-	-	-					1		1	1																																																																																																									3
CT	-	-	-					1																																																																																																												1
TA	-	-	-				2	1																																																																																																												3
AAG	-	-		1																																																																																																																1
AGA	-	-	2	4					1																																																																																																											7
CTT	-	-		10			1	1	1			3			1																																																																																																					17
TTC	-	-		1																																																																																																																1
AATG	-		1																																																																																																																	1
AGTT	-	1																																																																																																																		1
ATGA	-	1																																																																																																																		1
AAATT	1																																																																																																																			1
AAGAAA	1																																																																																																																			1
ATAAAA	1																																																																																																																			1
ATAATG	1																																																																																																																			1
CCAGCA	1																																																																																																																			1
GTATTC	1																																																																																																																			1
TTTATT	1																																																																																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																		1	1
AG/CT	-	-	-					1																																																																																																												1
AT/AT	-	-	-				2	2		1	1																																																																																																									6
AAG/CTT	-	-	2	16			1	1	2			3			1																																																																																																					26
AACT/AGTT	-	1																																																																																																																		1
AATG/ATTC	-	1	1																																																																																																																	2
AAATT/AATTT	1																																																																																																																			1
AAAAAG/CTTTTT	1																																																																																																																			1
AAAAAT/ATTTTT	2																																																																																																																			2
AATACG/ATTCGT	1																																																																																																																			1
AATGAT/ATCATT	1																																																																																																																			1
ACCAGC/CTGGTG	1																																																																																																																			1
