Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_028435255.1/fasta/hub_GCF_028435255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           5922436
Total number of identified SSRs:                 30
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	3
5	4
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-				1	1
ACA	-	-	1					1
GCG	-	-	1					1
AAAC	-	3						3
AGCGC	1							1
CCGCG	1							1
CGCGG	1							1
TTGCC	1							1
ACAGCA	1							1
ACCGAT	1							1
AGATCG	1							1
AGCCTG	1							1
AGGGGT	1							1
CCAGCA	1							1
CCCGAG		1						1
CCTACA			1					1
CCTGCA		1						1
CCTGCT	1							1
GCATCG	1							1
GCCCGA	1							1
GCGCCG	1							1
GCGGTT	1							1
GGCGGA	1							1
GGGCGA	1							1
TCAGGC	1							1
TCAGGG	1							1
TCGGGC	1							1
TTGGCG				1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-				1	1
AAC/GTT	-	-	1					1
CCG/CGG	-	-	1					1
AAAC/GTTT	-	3						3
AAGGC/CCTTG	1							1
AGCGC/CGCTG	1							1
CCGCG/CGCGG	2							2
AACAGC/CTGTTG	1							1
AACCGC/CGGTTG	1							1
AACGCC/CGTTGG				1				1
ACACCT/AGGTGT			1					1
ACCAGC/CTGGTG	1							1
ACCCCT/AGGGGT	1							1
ACCCTG/AGGGTC	1							1
ACCGAT/ATCGGT	1							1
ACCTGC/AGGTGC		1						1
AGATCG/ATCTCG	1							1
AGCAGG/CCTGCT	1							1
AGCCCG/CGGGCT	2	1						3
AGCCTG/AGGCTC	2							2
AGGCGG/CCGCCT	1							1
AGGGCG/CCCTCG	1							1
ATCGGC/ATGCCG	1							1
CCGGCG/CCGGCG	1							1
