Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_028069825.1/fasta/hub_GCF_028069825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              212
Total size of examined sequences (bp):           4795247
Total number of identified SSRs:                 29
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
4	1
5	5
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CA	-	-	-	1											1
CG	-	-	-	2											2
CCG	-	-	1												1
CGG	-	-	2												2
CTG	-	-	1												1
GCC	-	-	1												1
GGT	-	-			1										1
CCAA	-													1	1
ATCCC				1											1
CATCC	1														1
GCAGC	1														1
GCCGG	1														1
TGGCA	1														1
AAGCTG	1														1
CCAGCA	1														1
CCGACG		1													1
CTGGCG	1														1
GAAGTC	1														1
GATATC	1														1
GCCAGT					1										1
GCTCCG	1														1
GCTGGC	2														2
GGCAAC			1												1
GGCAAT								1							1
GTTCCA	1														1
TGCTCG		1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
CG/CG	-	-	-	2											2
ACC/GGT	-	-			1										1
AGC/CTG	-	-	1												1
CCG/CGG	-	-	4												4
AACC/GGTT	-													1	1
AGCGC/CGCTG	1														1
ATCCC/ATGGG	1			1											2
ATGCC/ATGGC	1														1
CCCGG/CCGGG	1														1
AACGGC/CCGTTG			1												1
AACTGG/AGTTCC	1														1
AAGCTG/AGCTTC	1														1
AAGTCG/ACTTCG	1														1
AATGGC/ATTGCC								1							1
ACCAGC/CTGGTG	1														1
ACGAGC/CGTGCT		1													1
ACGCCG/CGGCGT		1													1
ACTGGC/AGTGCC					1										1
AGCCGG/CCGGCT	1														1
AGCGCC/CGCTGG	3														3
ATATCG/ATATCG	1														1
