Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_028069815.1/fasta/hub_GCF_028069815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              301
Total size of examined sequences (bp):           4901730
Total number of identified SSRs:                 22
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	6
5	2
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
CT	-	-	-	1	1
TG	-	-	-	1	1
CGG	-	-	3		3
CTG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1		1
GCAGC	1				1
TGCCA	1				1
AAGCTG	1				1
CATTGC	1				1
CCAGCA	1				1
CGCCAA	1				1
CGTTGC				1	1
CTGGAA	1				1
CTGGCG	1				1
GAAGTC	1				1
GCGCCA	1				1
GCTCCG	1				1
GCTGGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AG/CT	-	-	-	1	1
CG/CG	-	-	-	1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	5		5
AGCGC/CGCTG	1				1
ATGCC/ATGGC	1				1
AACGCC/CGTTGG	1				1
AACGGC/CCGTTG				1	1
AACTGG/AGTTCC	1				1
AAGCTG/AGCTTC	1				1
AAGTCG/ACTTCG	1				1
AATGGC/ATTGCC	1				1
ACCAGC/CTGGTG	1				1
AGCCGG/CCGGCT	1				1
AGCGCC/CGCTGG	3				3
