Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-92/megassr/results/hub_GCF_028069775.1/fasta/hub_GCF_028069775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              123
Total size of examined sequences (bp):           4761631
Total number of identified SSRs:                 26
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	5
4	1
5	2
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
CG	-	-	-	1	1
CAG	-	-	1		1
CCG	-	-	2		2
CGG	-	-	1		1
GCC	-	-	1		1
TGAT	-	1			1
GCAGC	1				1
TGCCA	1				1
AAGCTG	1				1
ACAAAA	1				1
AGATAC	1				1
CAGGAG	1				1
CCAGCA	1				1
CGACTT	1				1
CTGGCG	1				1
GATATC	1				1
GCTGGC	2				2
GGAGCC	1				1
GGCAAC	1				1
GGCACA	1				1
GGTGGC	1				1
GTTCCA	1				1
TGGCAA		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	4		4
AATC/ATTG	-	1			1
AGCGC/CGCTG	1				1
ATGCC/ATGGC	1				1
AAAAAC/GTTTTT	1				1
AACGGC/CCGTTG	1				1
AACTGG/AGTTCC	1				1
AAGCTG/AGCTTC	1				1
AAGTCG/ACTTCG	1				1
AATGGC/ATTGCC		1			1
ACAGAT/ATCTGT	1				1
ACAGGC/CCTGTG	1				1
ACCAGC/CTGGTG	1				1
ACCGCC/CGGTGG	1				1
AGCAGG/CCTGCT	1				1
AGCCGG/CCGGCT	1				1
AGCGCC/CGCTGG	3				3
ATATCG/ATATCG	1				1
