Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_028069755.1/fasta/hub_GCF_028069755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              132
Total size of examined sequences (bp):           4760399
Total number of identified SSRs:                 18
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
CG	-	-	-	1	1
CAG	-	-	1		1
CCG	-	-	1		1
GCC	-	-	1		1
TTTG	-		1		1
ATTCC	1				1
CCATT	1				1
CGCTG	1				1
TGGCA	1				1
AACCAG	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GCCTGG	1				1
GCTGGC	1				1
GGAGCC	1				1
GTTCCA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	2		2
AAAC/GTTT	-		1		1
AATGG/ATTCC	2				2
AGCGC/CGCTG	1				1
ATGCC/ATGGC	1				1
AACCAG/CTGGTT	1				1
AACTGG/AGTTCC	1				1
AAGTCG/ACTTCG	1				1
AGCCGG/CCGGCT	1				1
AGCGCC/CGCTGG	3				3
AGGCCC/CCTGGG	1				1
