Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCF_028069725.1/fasta/hub_GCF_028069725.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              187
Total size of examined sequences (bp):           4714301
Total number of identified SSRs:                 27
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	9
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	3									3
GC	-	-	-	1									1
TG	-	-	-	1									1
CCG	-	-	2										2
CGC	-	-	1										1
CGT	-	-		1									1
GAT	-	-	1										1
GCC	-	-	1										1
GCT	-	-	1										1
GGC	-	-	1										1
TGA	-	-	1										1
AAAGC	1												1
ACGAC	1												1
ACTGG	1												1
ATTTT	1												1
ATCGTC	1												1
CCAGCG	1												1
CTGGCG	1												1
CTTCGT	1												1
GAAGTC	1												1
GATATC	1												1
GCTCCG	1												1
GGTGCA												1	1
GGTGCC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	1									1
CG/CG	-	-	-	4									4
ACG/CGT	-	-		1									1
AGC/CTG	-	-	1										1
ATC/ATG	-	-	2										2
CCG/CGG	-	-	5										5
AAAAT/ATTTT	1												1
AAAGC/CTTTG	1												1
ACACG/CGTGT	1												1
ACTGG/AGTCC	1												1
AAGACG/CGTCTT	1												1
AAGTCG/ACTTCG	1												1
ACCGGC/CCGGTG	1												1
ACCTGC/AGGTGC												1	1
ACGATG/ATCGTC	1												1
AGCCGG/CCGGCT	1												1
AGCGCC/CGCTGG	2												2
ATATCG/ATATCG	1												1
