Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-92/megassr/results/hub_GCF_027925085.1/fasta/hub_GCF_027925085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           1195152
Total number of identified SSRs:                 37
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	12
3	4
5	8
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AG	-	-	-	1				1
AT	-	-	-	2	1	1	1	5
TA	-	-	-	1		4		5
TC	-	-	-	1				1
AAG	-	-	1					1
CAG	-	-	1					1
TAA	-	-		1				1
TTA	-	-	1					1
AAAAC	1							1
ATAAA	1							1
ATTAT	1							1
ATTTT	1							1
GTTAA	3							3
TTTAT	1							1
ACTTGT	1							1
ATTTAT	1							1
CACCAG	1	2						3
CTACTG	1							1
GGAACA	1							1
TATATT				1				1
TGAAGA		1						1
TGTACT				1				1
TTAGCA	1							1
TTCAAA	1							1
TTCAAT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AG/CT	-	-	-	2				2
AT/AT	-	-	-	3	1	5	1	10
AAG/CTT	-	-	1					1
AAT/ATT	-	-	1	1				2
AGC/CTG	-	-	1					1
AAAAC/GTTTT	1							1
AAAAT/ATTTT	3							3
AACTT/AAGTT	3							3
AATAT/ATATT	1							1
AAATAT/ATATTT	1			1				2
AAATTC/AATTTG	1							1
AAATTG/AATTTC	1							1
AACAGG/CCTGTT	1							1
AAGATG/ATCTTC		1						1
AAGTAC/ACTTGT	1			1				2
AATGCT/AGCATT	1							1
ACCAGC/CTGGTG	1	2						3
ACTGCT/AGCAGT	1							1
