Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_026552775.1/fasta/hub_GCF_026552775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              358
Total size of examined sequences (bp):           5163644
Total number of identified SSRs:                 19
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	1			1
GC	-	-	-	2			2
CCG	-	-	3				3
CGG	-	-	1				1
GCA	-	-	1				1
TGA	-	-	1				1
TGG	-	-	1				1
ATAA	-	1					1
CCACG	1						1
CAACCA	1						1
CTGCGC	1						1
GAAGTC	1						1
GCACCA	1						1
TCTTCA	1						1
TGGCAC						1	1
TGTTGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	3			3
ACC/GGT	-	-	1				1
AGC/CTG	-	-	1				1
ATC/ATG	-	-	1				1
CCG/CGG	-	-	4				4
AAAT/ATTT	-	1					1
ACGCC/CGTGG	1						1
AACACC/GGTGTT	1						1
AACCAC/GGTTGT	1						1
AAGATG/ATCTTC	1						1
AAGTCG/ACTTCG	1						1
ACCAGC/CTGGTG	1						1
ACTGGC/AGTGCC						1	1
AGGCGC/CCTGCG	1						1
