Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_026552745.1/fasta/hub_GCF_026552745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              136
Total size of examined sequences (bp):           4968187
Total number of identified SSRs:                 13
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	4
5	1
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-														1	1
CG	-	-	-	1																												1
GC	-	-	-	3																												3
CCG	-	-	3																													3
TCA	-	-	1																													1
GCGTG	1																															1
GAAGTC	1																															1
GATGAA	1																															1
TGGTGC	1																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-														1	1
CG/CG	-	-	-	4																												4
ATC/ATG	-	-	1																													1
CCG/CGG	-	-	3																													3
ACGCC/CGTGG	1																															1
AAGATG/ATCTTC	1																															1
AAGTCG/ACTTCG	1																															1
ACCAGC/CTGGTG	1																															1
