Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_026552735.1/fasta/hub_GCF_026552735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              159
Total size of examined sequences (bp):           4647395
Total number of identified SSRs:                 14
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	6
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	2					2
ATC	-	-	1						1
CCG	-	-	2						2
GGC	-	-	1					1	2
TGA	-	-	1						1
AAATC	1								1
CCACG	1								1
GAAGC	1								1
GAAGTC	1								1
TGGTGC	1								1
TGTTCA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	2					2
ATC/ATG	-	-	2						2
CCG/CGG	-	-	3					1	4
AAATC/ATTTG	1								1
AAGCG/CGCTT	1								1
ACGCC/CGTGG	1								1
AACATG/ATGTTC	1								1
AAGTCG/ACTTCG	1								1
ACCAGC/CTGGTG	1								1
