Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_026552695.1/fasta/hub_GCF_026552695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              270
Total size of examined sequences (bp):           4965723
Total number of identified SSRs:                 33
Number of SSR containing sequences:              30
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13
2	4
3	8
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																								1	1	1		3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																			1																																																																																					3	1	4	1	10
CG	-	-	-	1																																																																																																																									1
GC	-	-	-	3																																																																																																																									3
ATC	-	-	1																																																																																																																										1
CCG	-	-	4																																																																																																																										4
CGG	-	-	1																																																																																																																										1
GCG	-	-	1																																																																																																																										1
TCA	-	-	1																																																																																																																										1
AAAAT	1																																																																																																																												1
CAGCG	1																																																																																																																												1
CGCGT	1																																																																																																																												1
ACCTAA										1																																																																																																																			1
GAAGTC	1																																																																																																																												1
GATGAA	1																																																																																																																												1
TGATAC	1																																																																																																																												1
TGGTGC	1																																																																																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																			1																																																																																					4	2	5	1	13
CG/CG	-	-	-	4																																																																																																																									4
ATC/ATG	-	-	2																																																																																																																										2
CCG/CGG	-	-	6																																																																																																																										6
AAAAT/ATTTT	1																																																																																																																												1
ACGCG/CGCGT	1																																																																																																																												1
AGCGC/CGCTG	1																																																																																																																												1
AAACCT/AGGTTT										1																																																																																																																			1
AAGATG/ATCTTC	1																																																																																																																												1
AAGTCG/ACTTCG	1																																																																																																																												1
ACCAGC/CTGGTG	1																																																																																																																												1
ACTGAT/AGTATC	1																																																																																																																												1
