Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-72/megassr/results/hub_GCF_026552635.1/fasta/hub_GCF_026552635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              749
Total size of examined sequences (bp):           5795388
Total number of identified SSRs:                 24
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	6
3	9
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1			1	2
AG	-	-	-	1																						1
CG	-	-	-	2																						2
GC	-	-	-	3																						3
CCG	-	-	4																							4
CGG	-	-	2																							2
CTG	-	-	1																							1
GCG	-	-	1																							1
TCA	-	-	1																							1
AAAAT	1																									1
AATTT	1																									1
CAGCG	1																									1
CGACTT	1																									1
GATGGT			1																							1
GCACCA	1																									1
TGGTGC				1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1			1	2
AG/CT	-	-	-	1																						1
CG/CG	-	-	-	5																						5
AGC/CTG	-	-	1																							1
ATC/ATG	-	-	1																							1
CCG/CGG	-	-	7																							7
AAAAT/ATTTT	1																									1
AAATT/AATTT	1																									1
AGCGC/CGCTG	1																									1
AAGTCG/ACTTCG	1																									1
ACCAGC/CTGGTG	1			1																						2
ACCATC/ATGGTG			1																							1
