Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCF_026552625.1/fasta/hub_GCF_026552625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              204
Total size of examined sequences (bp):           4837262
Total number of identified SSRs:                 14
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	6
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	2	2
CCG	-	-	3		3
CGG	-	-	2		2
TCA	-	-	1		1
CAGCG	1				1
CCACG	1				1
AGATAC	1				1
CAACCA		1			1
GAAGTC	1				1
GCACCA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
ATC/ATG	-	-	1		1
CCG/CGG	-	-	5		5
ACGCC/CGTGG	1				1
AGCGC/CGCTG	1				1
AACCAC/GGTTGT		1			1
AAGTCG/ACTTCG	1				1
ACAGAT/ATCTGT	1				1
ACCAGC/CTGGTG	1				1
