Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-69/megassr/results/hub_GCF_026552575.1/fasta/hub_GCF_026552575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              277
Total size of examined sequences (bp):           5426477
Total number of identified SSRs:                 20
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	1	1
GC	-	-	-	2	2
CCG	-	-	3		3
CGG	-	-	1		1
GCT	-	-	1		1
TGA	-	-	1		1
TGC	-	-		1	1
ACGCG		1			1
CAAAT	1				1
GCGTG	1				1
ATCTGG	1				1
CGACTT	1				1
GATGAA	1				1
GGAGCC	1				1
GTGCCA	1				1
TGGTGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	3	3
AGC/CTG	-	-	1	1	2
ATC/ATG	-	-	1		1
CCG/CGG	-	-	4		4
AAATC/ATTTG	1				1
ACGCC/CGTGG	1				1
ACGCG/CGCGT		1			1
AAGATG/ATCTTC	1				1
AAGTCG/ACTTCG	1				1
ACCAGC/CTGGTG	1				1
ACTGGC/AGTGCC	1				1
AGATCC/ATCTGG	1				1
AGCCGG/CCGGCT	1				1
