Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_026552555.1/fasta/hub_GCF_026552555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              177
Total size of examined sequences (bp):           5292628
Total number of identified SSRs:                 26
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	1							1
GC	-	-	-	2							2
CGC	-	-			1						1
CGG	-	-	3								3
GCA	-	-	1								1
GCG	-	-	1								1
TCA	-	-	1								1
TAAA	-	1									1
AGAGA		1									1
CGCTG	1										1
GCGTG	1										1
TTTTA	1										1
CGACTT	1										1
CTGTCG	1										1
GCCACC	1										1
GCGATG								1			1
GGCGGT	1										1
GGTGGC		1									1
TCTTCA	1										1
TGATAC	1										1
TGGCAC					1					1	2
TTAGCA				1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	3							3
AGC/CTG	-	-	1								1
ATC/ATG	-	-	1								1
CCG/CGG	-	-	4		1						5
AAAT/ATTT	-	1									1
AAAAT/ATTTT	1										1
AAGAG/CTCTT		1									1
ACGCC/CGTGG	1										1
AGCGC/CGCTG	1										1
AAGATG/ATCTTC	1										1
AAGTCG/ACTTCG	1										1
AATGCT/AGCATT				1							1
ACAGCG/CGCTGT	1										1
ACCGCC/CGGTGG	2	1									3
ACTGAT/AGTATC	1										1
ACTGGC/AGTGCC					1					1	2
ATCGCC/ATGGCG								1			1
