Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCF_026552495.1/fasta/hub_GCF_026552495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              295
Total size of examined sequences (bp):           5011543
Total number of identified SSRs:                 19
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	8
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AC	-	-	-		1	1
GC	-	-	-	4		4
CCG	-	-	2			2
CGG	-	-	2			2
CGT	-	-	1			1
GGC	-	-	1			1
TCA	-	-	1			1
TGA	-	-	1			1
AGCGC	1					1
ATTTT	1					1
CAGCG	1					1
GCGTG	1					1
GAAGTC	1					1
GCACCA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AC/GT	-	-	-		1	1
CG/CG	-	-	-	4		4
ACG/CGT	-	-	1			1
ATC/ATG	-	-	2			2
CCG/CGG	-	-	5			5
AAAAT/ATTTT	1					1
ACGCC/CGTGG	1					1
AGCGC/CGCTG	2					2
AAGTCG/ACTTCG	1					1
ACCAGC/CTGGTG	1					1
