Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-62/megassr/results/hub_GCF_026552445.1/fasta/hub_GCF_026552445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              314
Total size of examined sequences (bp):           5134723
Total number of identified SSRs:                 18
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	1
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	1						1
GC	-	-	-	3						3
CCG	-	-	2							2
CGG	-	-	2							2
GCA	-	-	1							1
GTG	-	-	1							1
TGA	-	-	1							1
GCGTG	1									1
CCAGCC	1									1
GAAGTC	1									1
GCACCA	1									1
TCTGGC				1						1
TCTTCA		1								1
TGGCAC									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	4						4
ACC/GGT	-	-	1							1
AGC/CTG	-	-	1							1
ATC/ATG	-	-	1							1
CCG/CGG	-	-	4							4
ACGCC/CGTGG	1									1
AAGATG/ATCTTC		1								1
AAGTCG/ACTTCG	1									1
ACCAGC/CTGGTG	1									1
ACTGGC/AGTGCC									1	1
AGAGCC/CTCTGG				1						1
AGCCCC/CTGGGG	1									1
