Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-60/megassr/results/hub_GCF_026552415.1/fasta/hub_GCF_026552415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              376
Total size of examined sequences (bp):           5161202
Total number of identified SSRs:                 20
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
GC	-	-	-	2	2
CCA	-	-	1		1
CCG	-	-	1		1
CGG	-	-	3		3
GCA	-	-	1		1
TCA	-	-	1		1
TGGT	-	1			1
TTTA	-	1			1
GCGTG	1				1
TCTTC		1			1
AATTGG			1		1
CAACCA	1				1
CGACTT	1				1
GATGAA	1				1
GCACCA	1				1
GCGCAG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	3	3
ACC/GGT	-	-	1		1
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1		1
CCG/CGG	-	-	4		4
AAAT/ATTT	-	1			1
AACC/GGTT	-	1			1
AAGAG/CTCTT		1			1
ACGCC/CGTGG	1				1
AACCAC/GGTTGT	1				1
AAGATG/ATCTTC	1				1
AAGTCG/ACTTCG	1				1
AATTCC/AATTGG			1		1
ACCAGC/CTGGTG	1				1
AGGCGC/CCTGCG	1				1
