Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_026256925.1/fasta/hub_GCF_026256925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              678
Total size of examined sequences (bp):           4686693
Total number of identified SSRs:                 21
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
AGC	-	-	1		1
CGC	-	-	1		1
CGG	-	-	1		1
GCC	-	-		1	1
GCG	-	-	1		1
CCGCA	1				1
CGCCC	1				1
CGCGC	1				1
GAAGA		1			1
GACCG	2				2
GCTTC	1				1
AACGGG	1				1
ATACAG	1				1
CATCGC		1			1
CCCGAG	1				1
GACCAT	1				1
GGCCTT	1				1
TCGGCA	1				1
TGGCGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	3	1	4
AAGAG/CTCTT		1			1
AAGCG/CGCTT	1				1
ACCGC/CGGTG	1				1
ACCGG/CCGGT	2				2
CCCCG/CGGGG	1				1
CCGCG/CGCGG	1				1
AACGGG/CCCGTT	1				1
AAGGCC/CCTTGG	1				1
ACAGAT/ATCTGT	1				1
ACCATG/ATGGTC	1				1
AGCCCG/CGGGCT	1				1
AGCGCC/CGCTGG	1				1
ATCGCC/ATGGCG		1			1
ATCGGC/ATGCCG	1				1
