Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCF_026256595.1/fasta/hub_GCF_026256595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              70
Total size of examined sequences (bp):           5369620
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	2
3	5
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1								1	2
GC	-	-	-	1																										1
TC	-	-	-			1																								1
CGC	-	-	1																											1
GCC	-	-		1																										1
GCT	-	-	1																											1
GGC	-	-	1																											1
GGT	-	-	1																											1
CCGCG	1																													1
CCTTT	1																													1
GCGAA	1																													1
GCGGC	1																													1
GGCAT	1																													1
GGCGC	1																													1
TGCGG	1																													1
AAGGCC	1																													1
CGACGG	1																													1
GACCAT	1																													1
GCCGAC	1																													1
GCTGCC	1																													1
TGGCGC	1																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1								1	2
AG/CT	-	-	-			1																								1
CG/CG	-	-	-	1																										1
ACC/GGT	-	-	1																											1
AGC/CTG	-	-	1																											1
CCG/CGG	-	-	2	1																										3
AAAGG/CCTTT	1																													1
AAGCG/CGCTT	1																													1
ACCGC/CGGTG	1																													1
ATGCC/ATGGC	1																													1
CCGCG/CGCGG	3																													3
AAGGCC/CCTTGG	1																													1
ACCATG/ATGGTC	1																													1
ACGCCG/CGGCGT	1																													1
ACGGCG/CCGTCG	1																													1
AGCGCC/CGCTGG	1																													1
AGCGGC/CCGCTG	1																													1
