Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCF_026256585.1/fasta/hub_GCF_026256585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           4778228
Total number of identified SSRs:                 20
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	7
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GAA	-	-									1	1
GAC	-	-	1									1
GCC	-	-	1									1
GCG	-	-	1									1
GCT	-	-	1									1
GGC	-	-	1	1								2
ACCAC	1											1
GACCG	1											1
GCGGC	1											1
GCTTC	1											1
GGCGC	1											1
AAGGCC	1											1
CATCGC	1											1
CCAAGC	1											1
CGATGG	1											1
CGCCGT	1											1
GCGCCA	1											1
TCCCAG		1										1
TGGTCA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AAG/CTT	-	-									1	1
ACG/CGT	-	-	1									1
AGC/CTG	-	-	1									1
CCG/CGG	-	-	3	1								4
AAGCG/CGCTT	1											1
ACACC/GGTGT	1											1
ACCGG/CCGGT	1											1
CCGCG/CGCGG	2											2
AAGCCC/CTTGGG	1											1
AAGGCC/CCTTGG	1											1
ACCATG/ATGGTC	1											1
ACGGCG/CCGTCG	1											1
ACTGGG/AGTCCC		1										1
AGCGCC/CGCTGG	1											1
ATCGCC/ATGGCG	2											2
