Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCF_026256565.1/fasta/hub_GCF_026256565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              296
Total size of examined sequences (bp):           5213790
Total number of identified SSRs:                 23
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
GC	-	-	-	2	2
AAC	-	-	1		1
AGC	-	-	1		1
CGC	-	-	2		2
CGG	-	-	1		1
GCC	-	-		1	1
GGC	-	-	2		2
ATCGG	1				1
CGGTC	1				1
GAAGA		1			1
GCGAA	1				1
GGCGC	1				1
TGCGG	1				1
AAGGCC	1				1
CCGCCA	1				1
CGGAAA	1				1
CGGGAA	1				1
GCGCCA	1				1
TGCCGA	1				1
TGGTCG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
AAC/GTT	-	-	1		1
AGC/CTG	-	-	1		1
CCG/CGG	-	-	5	1	6
AAGAG/CTCTT		1			1
AAGCG/CGCTT	1				1
ACCGC/CGGTG	1				1
ACCGG/CCGGT	1				1
ATCCG/ATCGG	1				1
CCGCG/CGCGG	1				1
AAACGG/CCGTTT	1				1
AACGGG/CCCGTT	1				1
AAGGCC/CCTTGG	1				1
ACCACG/CGTGGT	1				1
ACCGCC/CGGTGG	1				1
AGCGCC/CGCTGG	1				1
ATCGGC/ATGCCG	1				1
