Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_026240005.1/fasta/hub_GCF_026240005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           6395700
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	6
5	2
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
GC	-	-	-	1				1
AAC	-	-					1	1
ACC	-	-		1				1
CAC	-	-	3					3
TGG	-	-			1			1
CGACC	1							1
GCCGC	1							1
AAAAGC	1							1
AAAGGC		1						1
AGAGGT	1							1
AGATCA			1					1
AGGGTG	1							1
CAAGGC	1							1
CAGGCC	1							1
CCTGCA			1					1
GCCACC	1							1
GCTTTG	1							1
TGCCAA		1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	1				1
AAC/GTT	-	-					1	1
ACC/GGT	-	-	3	1	1			5
ACCCG/CGGGT	1							1
CCGCG/CGCGG	1							1
AAAAGC/CTTTTG	1							1
AAAGCC/CTTTGG	1							1
AAAGGC/CCTTTG		1						1
AAGATC/ATCTTG			1					1
AAGGCC/CCTTGG	1							1
AATGCC/ATTGGC		1						1
ACCCTC/AGGGTG	1							1
ACCGCC/CGGTGG	1							1
ACCTCT/AGAGGT	1							1
ACCTGC/AGGTGC			1					1
AGGCCC/CCTGGG	1							1
