Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_026192315.1/fasta/hub_GCF_026192315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           5745558
Total number of identified SSRs:                 43
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
5	11
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
CG	-	-	-	2	1																								3
GC	-	-	-	1																									1
CAG	-	-	1																										1
CCA	-	-	2																										2
CCG	-	-	3																										3
CGC	-	-	1																										1
CGG	-	-	2																										2
CTG	-	-	2																										2
GAC	-	-	1																										1
GCC	-	-	2	1																									3
GGC	-	-	2																										2
GTC	-	-	1																										1
AATAA	1																												1
AATCA	1																												1
ACCAG	1																												1
CCACG	1																												1
CCCGG	1																												1
CCGCG	1																												1
CTGAC	1																												1
GCTGG			1																										1
GGCGC	1																												1
TCTCT	1																												1
TTTAT	1																												1
AGAGGA	1																												1
CGGCCA	1																												1
CTGGTG	1																												1
CTGGTT		1																											1
GAAGTC	1																												1
GCTCCG		1																											1
GTGGAA	1																												1
TCTTCG	1																												1
TGCGGC	1																												1
TGCTCC																												1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
CG/CG	-	-	-	3	1																								4
ACC/GGT	-	-	2																										2
ACG/CGT	-	-	2																										2
AGC/CTG	-	-	3																										3
CCG/CGG	-	-	10	1																									11
AAAAT/ATTTT	2																												2
AAATC/ATTTG	1																												1
AAGAG/CTCTT	1																												1
ACCAG/CTGGT	1																												1
ACCTG/AGGTC	1																												1
ACGCC/CGTGG	1																												1
AGCCC/CTGGG			1																										1
CCCGG/CCGGG	1																												1
CCGCG/CGCGG	2																												2
AACCAG/CTGGTT		1																											1
AAGACG/CGTCTT	1																												1
AAGAGG/CCTCTT	1																												1
AAGTCG/ACTTCG	1																												1
AAGTGG/ACTTCC	1																												1
ACCAGC/CTGGTG	1																												1
ACGGCC/CCGTGG	1																												1
AGCAGG/CCTGCT																												1	1
AGCCGC/CGGCTG	1																												1
AGCCGG/CCGGCT		1																											1
