Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_026155345.1/fasta/hub_GCF_026155345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              24
Total size of examined sequences (bp):           4532882
Total number of identified SSRs:                 28
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2			2
GC	-	-	-	3			3
TA	-	-	-	1			1
CAC	-	-	1				1
CGC	-	-	1				1
CGG	-	-	3				3
CTG	-	-	1				1
GCA	-	-	1				1
AATG	-					1	1
CGACG	1						1
CGCGC	1						1
GCGCT	1						1
GGCGC	1						1
AGGGTG		1					1
ATCGTC	1						1
CGACTT	1						1
CGCGGG	1						1
CTGGCG	1						1
GAAGAT		1					1
GCCAGC	1						1
GCTGGC	1						1
GGCGAT	1						1
TCTCCC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5			5
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2				2
CCG/CGG	-	-	4				4
AATG/ATTC	-					1	1
ACGCG/CGCGT	1						1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGATG/ATCTTC		1					1
AAGTCG/ACTTCG	1						1
ACCCTC/AGGGTG		1					1
ACGATG/ATCGTC	1						1
AGAGGG/CCCTCT	1						1
AGCGCC/CGCTGG	3						3
ATCGCC/ATGGCG	1						1
CCCGCG/CGCGGG	1						1
